Changes in version 1.0                         

2021-12-01

1.  TreeDimensionTest version 1.0 created.

                 Changes in version 0.0.2 (2022-03-12)                  

2022-03-11

1.  Created package version 0.0.2 from 0.0.1.1.

                       Changes in version 0.0.1.1                       

2022-03-10

1.  Removed the method parameter in separability() function.
    Separability is computed using the formula presented in the paper
2.  Modified minSubtreeCover() function in tree_dim_src.cpp to represent
    a tree by an adjacency list.
3.  Included code to check for required parameters in separability()
    function.

2022-02-10

1.  Added a method parameter to the separability() function. A value of
    "original" returns tissue specificity as used in the original paper.
    A value of "normalized" returns the normalized tissue specificity.
2.  Modified test.trajectory() and compute.stats() to return size of
    original dimension and number of PCA components.
3.  Modified test.trajectory() to return a class of type "treedim" and
    to return an additional component "mst" in the list.
4.  Modified separability() to return a class of type "treedim" and to
    return an additional component "mst" in the list.
5.  Created a function plot.treedim() that plots an MST for an object of
    type "treedim".

2022-01-20

1.  Created package version 0.0.1.1 from 0.0.1.
2.  License changed from GPL (>= 2) to LGPL (>= 3).
3.  Updated CITATION.
4.  Included "@importFrom Rdpack reprompt" to avoid NOTE to 0.0.1 on
    CRAN.

                 Changes in version 0.0.1 (2022-01-20)                  

2022-01-17

1.  Replaced the "ComputeMST" function from emstreeR package with "emst"
    function from mlpack package to compute fast MST.

2.  Modified "getStatistics" function to accommodate output of "emst"
    function which is now a list. Output of "ComputeMST" was a
    dataframe.

3.  Removed 'randomize' function

4.  Removed 'DFtoNM' function

2021-12-12

1.  Created inst/extdata to store data used by vignette. Added data
    files bifurcating_7.rds, calcium_pathway_data.rdata and
    ribosome_pathway_data.rdata.

2.  Created testcases using testthat package. Created
    test-testrajectory.R file, which contains test cases for functions
    'test.trajectory' and 'compute.stats'. Also created
    test-separability.R file which contains test cases for function
    'separability'.

3.  Modified function 'plotTree' to accept node colors as argument

4.  Modified vignette to improve visibility of separability plots

2021-12-11

1.  TreeDimensionTest version 0.0.1 created from version 1.0.
2.  Replaced depreciated random_shuffle() by shuffle() in
    tree_dim_src.cpp.