Package: TreeDimensionTest 0.0.2

TreeDimensionTest: Trajectory Presence and Heterogeneity in Multivariate Data

Testing for trajectory presence and heterogeneity on multivariate data. Two statistical methods (Tenha & Song 2022) <doi:10.1371/journal.pcbi.1009829> are implemented. The tree dimension test quantifies the statistical evidence for trajectory presence. The subset specificity measure summarizes pattern heterogeneity using the minimum subtree cover. There is no user tunable parameters for either method. Examples are included to illustrate how to use the methods on single-cell data for studying gene and pathway expression dynamics and pathway expression specificity.

Authors:Lovemore Tenha [aut], Joe Song [aut, cre]

TreeDimensionTest_0.0.2.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
TreeDimensionTest/json (API)
NEWS

# Install 'TreeDimensionTest' in R:
install.packages('TreeDimensionTest', repos = c('https://joemsong.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

2.70 score 1 scripts 159 downloads 4 exports 26 dependencies

Last updated from:92d770f047. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK189
linux-devel-x86_64OK150
source / vignettesOK188
linux-release-arm64OK162
linux-release-x86_64OK178
macos-release-arm64OK198
macos-release-x86_64OK233
macos-oldrel-arm64OK161
macos-oldrel-x86_64OK194
windows-develOK130
windows-releaseOK119
windows-oldrelOK204
wasm-releaseOK122

Exports:compute.statsempirical.distributionsseparabilitytest.trajectory

Dependencies:clicpp11fitdistrplusglueGPArotationigraphlatticelifecyclemagrittrMASSMatrixmlpackmnormtnFactorsnlmepkgconfigpsychrbibutilsRColorBrewerRcppRcppArmadilloRcppEnsmallenRdpackrlangsurvivalvctrs

Tutorial: Using the 'TreeDimensionTest' package

Rendered fromTutorial.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2022-03-12
Started: 2022-01-20